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Home » Recipes » Gluten-free Recipes

Chocolate-full gluten-free triple chocolate muffins

By: kseniaprints · Updated: Mar 2, 2025 · This post may contain affiliate links.

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Loaded with chocolate chips, chunks, and cocoa powder, these smooth banana bread crumb muffins transform into a vehicle for the ultimate chocolate flavor.

A group of chocolate banana muffins on a white surface.

Though people love to hate them, a brown mushy banana can be a thing of beauty — especially as it serves as the base for these chocolate-packed, gluten-free triple chocolate muffins!

My brother-in-law is a chocolate fiend. If I want him to enjoy a dessert in my house, I better make sure it has chocolate in it. He loved my chocolate almond tart and no-bake pistachio cake. So when I went on a muffin-making spree with my kids, I knew I had to include some chocolate muffins in the deal.

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These gluten-free triple chocolate muffins are a chocolate lover’s dream. Use all of my tips and tricks to make gluten-free triple chocolate muffins that taste like they’re fresh from the bakery.

Turning Triple Chocolate Muffins into a Gluten-Free Recipe

A chocolate cupcake sitting on a white surface.

As someone who follows a gluten-free diet, I’ve learned a thing or two about how to adapt classic recipes into a delicious gluten-free version. The trick is all in the flour, since not all gluten-free flours are created equal. 

I like to invest in quality all-purpose flour that’s a cup-for-cup match of traditional flour. Brands like King Arthur Gluten-Free 1:1 Blend, Bob’s Red Mill 1:1 Gluten-Free Flour, or Thomas Keller Cup4Cup Blend are all wonderful flours that will keep your baked goods fluffy and light. For the best results, I combine these commercial blends with almond flour or even coconut flour for a slightly different texture and taste to the muffins.

More gluten free muffin recipes:

If you have a fondness for muffins that are free from gluten, be sure to taste my homemade gluten-free chocolate chip muffins. If you prefer muffins with berries, I highly recommend trying my lemon blueberry muffins. And if you want the ultimate combination of flavors, my gluten-free chocolate blueberry muffins are an absolute favorite among my children! For pumpkin-flavored muffins, try my easy pumpkin spice muffins or pumpkin spice bars with cranberry glaze, both made with this easy 4-ingredient homemade pumpkin spice.

Ingredients You Need To Make These Gluten-Free Triple Chocolate Muffins

Ingredients for gluten free triple chocolate muffins.

To make these gluten-free chocolate muffins, you will need a few ingredients. Most of these are probably in your pantry already!

  • Bananas: Provide moisture and natural sweetness. Overripe bananas are ideal for a stronger flavor.
  • Lemon juice: Adds brightness and helps activate leavening agents.
  • Butter or coconut oil: Adds richness and moisture. Butter for flavor or coconut oil for a dairy-free option.
  • Greek yogurt: Contributes to a tender crumb. Sour cream can be used as a substitute.
  • Milk: Helps to combine ingredients. Any dairy or non-dairy milk works.
  • Eggs: Act as a binder and give structure. Flax or chia eggs can be used for a vegan alternative.
  • Gluten free flour blend: Creates the structure of the muffins. Ensure it's suitable for baking and has a 1-to-1 substitution ratio.
  • Almond flour: Adds a nutty flavor and moisture. Other nut flours or ground seeds can be alternatives.
  • Brown sugar: Sweetens the muffins. Maple syrup or honey are possible substitutes but may change the texture.
  • Rich cocoa powder: Provides a deep chocolate flavor. Dutch-processed or natural cocoa powder can be used.
  • Baking powder & baking soda: These are leavening agents that help the muffins rise.
  • Xanthan gum: Gives elasticity to gluten-free baked goods. Guar gum is an alternative.
  • Salt: Enhances flavor. Any fine salt will work.
  • Chocolate chips: Add chocolaty bites. I prefer dark chocolate chips, but you can use various chocolate chips here, even mini chocolate chips or a mix of dark and white chocolate chips!
  • High-quality chocolate: Gives a rich chocolate taste and texture. Can be any type of chocolate bar, chopped. My brother in law loves milk chocolate, but I am partial to dark chocolate. 

Equipment

●  Muffin pan

●  Muffin liners

●  Set of measuring cups

●  Mixing bowl

●  Spatula

How to Make Gluten-Free Triple Chocolate Muffins

Preparation:

Begin by preheating your oven to 375°F (190°C). Line your muffin tin with paper liners or grease them to ensure your gluten-free muffins don't stick.

Wet Ingredients:

A hand is holding a purple hand mixer.

In a large bowl, thoroughly mash the bananas. Mix in the lemon juice, melted butter or coconut oil, Greek yogurt, milk, and eggs until well combined.

Dry Ingredients:

In a different bowl, whisk together the gluten-free flour blend, almond flour, brown sugar, cocoa powder, baking powder, baking soda, xanthan gum, and salt. This mixture will help your muffins to rise properly.

Combine Mixtures:

Pour the wet ingredients into the dry ingredients. Stir them together just until combined to avoid overmixing, which can prevent the muffins from rising correctly.

Chocolate Addition:

A bowl of batter with chocolate chips and other ingredients.

Gently fold in the majority of the chocolate chips and diced high-quality chocolate into the batter, setting aside some chocolate chips to sprinkle on top later.

Filling the Muffin Cups:

Distribute the batter evenly into the muffin cups, filling each one to the top, to encourage well-shaped, risen muffins.

Baking:

Chocolate muffins in a pan on a wooden table.

Top each muffin with the remaining chocolate chips. Bake in the preheated oven for 20-25 minutes or until the muffins are risen and springy to the touch.

Cooling:

Once baked, remove the muffin tin from the oven and let the muffins cool in the pan for 5 minutes. This helps them to set and makes for easier removal. Afterward, transfer the muffins to a cooling rack to let them cool completely. The cooling rack ensures air circulation for even cooling and prevents the muffins from becoming moist on the bottom.

Enjoy your gluten free muffins once they've fully cooled, with their rich chocolate flavor and perfect texture.

Storage

A group of chocolate muffins on a white surface.

If you have any leftover triple chocolate muffins, you can store the muffins in an airtight container in the refrigerator for up to a week. You can also store them at room temperature in an airtight container for up to four days.

To freeze the muffins, let them cool completely and place in an airtight container or resealable bag and store for up to three months. Allow the muffins to thaw at room temperature or warm up the muffin in the microwave for 30 seconds when you’re ready to eat them.

Top Tips

Spoon and Level - The “Spoon and Level” method is a fool-proof way to measure gf flour. Start by spooning your flour into a measuring cup until you have the correct amount. Then, use the back of a knife to level off the flour in the measuring cup. This extra step prevents you from accidentally packing in the flour and ending up with an excess of flour for the recipe.

Use a Cookie Dough Scoop - A cookie dough scoop like this one is a great tool to have on hand for baking. They help produce uniform cookies and clearly divide muffin batter into the tins.

Fill the Muffin Tins - For bakery-style muffins that have a beautiful height, remember to fill each of your muffin tins to the top.

Variations

A hand reaching for gluten free triple chocolate muffins on a white surface.

●  Fruit - Use fresh raspberries or strawberries in this recipe for a variation on the classic fruit and chocolate combinations. Substitute the chocolate chips for a handful of the raspberries or diced strawberries.

●  White Chocolate - For a fun twist on the triple chocolate component of this muffin, try using white chocolate chips instead of regular chocolate chips.

●  Peanut butter chips - The only thing better than a recipe that uses three kinds of chocolate is one that brings chocolate and peanut butter together. Substitute the chocolate chips for peanut butter baking chips to turn these into chocolate and peanut butter muffins.

If you're looking for a less cocoa-filled muffin recipe, follow my almond flour gluten free banana chocolate chip muffins recipe.

Can I turn these gluten-free triple chocolate muffins into mini muffins?

You can easily turn this recipe into one that will produce about 24 gluten-free mini muffins. Follow the recipe as written, use miniature chocolate chips and divide the batter into a mini muffin pan and then bake at 375 degrees Fahrenheit for 12 - 14 minutes.

How can I use this recipe to make a gluten-free triple chocolate loaf?

This recipe doubles as a recipe for a delicious gluten-free triple chocolate loaf. Using the recipe as written, pour the batter into a 9x5 loaf pan and then bake it for 55 - 60 minutes at 375 degrees Fahrenheit or until fully cooked.

What if I’m not gluten-free? Can I use traditional flour for this triple chocolate muffin recipe?

This recipe works just as well with all-purpose flour if you’d prefer to use that instead.

More gluten free recipes:

If you’re looking for more gluten-free recipes, check out these dishes:

●  4 tropical vegan overnight oats

●  Gluten-free cranberry pistachio cookies

●  Savory galette with caramelized onions and pumpkin

●  Incredible low carb gluten free apple pie with a lattice pie top

Recipe

Tried and loved this recipe? Please leave a 5-star review below! Your reviews mean a lot to me, so if you've got any questions, please let me know in a comment.

A group of gluten free triple chocolate muffins.

Gluten-Free Triple Chocolate Muffins Recipe

Ksenia Prints
These gluten-free triple chocolate muffins are a chocolate lover’s dream. Use all of my tips and tricks to make gluten-free triple chocolate muffins that taste like they’re fresh from the bakery.
5 from 46 votes
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Prep Time 15 minutes mins
Cook Time 25 minutes mins
Total Time 40 minutes mins
Course Dessert
Servings 12 servings
Calories 355 kcal

Equipment

  • Muffin tin
  • Mixing Bowl
  • muffin liners
  • Measuring cups

Ingredients
  

  • 2 bananas
  • 2 tablespoons lemon juice
  • ⅔ cup 150g butter or coconut oil, melted
  • ⅔ cup 150g Greek yogurt
  • ½ cup 120ml milk
  • 2 eggs
  • 2 cups 280g gluten-free flour blend
  • ¾ cup 80g almond flour
  • ¾ cup 150g brown sugar
  • ⅓ cup 30g cocoa powder
  • 2 teaspoons baking powder
  • 1 teaspoon baking soda
  • 1 teaspoon xanthan gum
  • ¼ teaspoon salt
  • ¼ cup 45g chocolate chips
  • ¼ cup 45g high-quality chocolate, diced

Instructions
 

  • Preheat the oven to 375°F (190°C). Line a muffin tin with paper liners or grease with butter or oil.
  • In a large bowl, mash the bananas with a fork. Add lemon juice, melted butter or coconut oil, Greek yogurt, milk, and eggs. Mix well.
  • In another bowl, combine gluten-free flour blend, almond flour, brown sugar, cocoa powder, baking powder, baking soda, xanthan gum, and salt.
  • Add the wet ingredients to the dry ingredients and mix until just combined.
  • Fold in the chocolate chips and diced high-quality chocolate, reserving some of each to sprinkle on top of the muffins.
  • Fill each muffin cup to the brim with batter.
  • Sprinkle the reserved chocolate chips and diced chocolate on top of the batter in each muffin cup. Bake for 20-25 minutes or until a toothpick inserted into the center comes out clean.
  • Let the muffins cool in the tin for 5 minutes, then transfer to a wire rack to cool completely.

Nutrition

Serving: 1gCalories: 355kcalCarbohydrates: 42gProtein: 7gFat: 21gSaturated Fat: 13gPolyunsaturated Fat: 1gMonounsaturated Fat: 2gTrans Fat: 0.01gCholesterol: 29mgSodium: 241mgPotassium: 198mgFiber: 5gSugar: 21gVitamin A: 72IUVitamin C: 3mgCalcium: 120mgIron: 2mg
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Mixing Bowl
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About Ksenia

Welcome to At The Immigrant's Table! I blend my immigrant roots with modern diets, crafting recipes that take you on a global kitchen adventure. As a food blogger and photographer, I'm dedicated to making international cuisine both healthy and accessible. Let's embark on a culinary journey that bridges cultures and introduces a world of flavors right into your home. Read more...

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      Comments

        5 from 46 votes (44 ratings without comment)

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      1. Courtney says

        February 22, 2024 at 9:52 pm

        5 stars
        I love chocolate muffins, and I bet substituting the peanut butter chips like you mentioned would be amazing!

        Reply
      2. Liv says

        February 27, 2024 at 7:03 pm

        5 stars
        Oh wow, these really did taste like they came straight from the bakery! So good

        Reply
      A woman cutting a pumpkin in a kitchen while preparing healthy international recipes.

      Privet, I am Ksenia Prints! I help adventurous home cooks explore the world through healthy international recipes.

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