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Home » Recipes » Muffins

The best gluten free blueberry muffins recipe with a touch of lemon

By: kseniaprints · Updated: Mar 26, 2026 · This post may contain affiliate links.

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These gluten free blueberry muffins recipe have a touch of lemon and are loved by adults and kids. The only blueberry muffin recipe you need, along with my winning tips and tricks for making gluten free blueberry muffins that are bursting with flavor.

gluten free blueberry muffin cut in half and more around

Introduction

Attention, parents and dessert enthusiasts alike! Get ready for a muffin recipe that will have your taste buds doing somersaults and your little ones jumping for joy. We present to you the mouthwatering marvels known as Gluten-Free Lemon Blueberry Muffins!

Oh, the struggle of finding the perfect blueberry muffin recipe for families with gluten intolerant kids is REAL. But once your children sink their teeth into these delectable treats, there's no turning back. Brace yourselves for a symphony of zesty lemon, bursting blueberries, and the sheer delight that only muffins made with love can deliver.

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This recipe, inspired by Katarina Cermelj's excellent gluten free baking book, Baked to Perfection, has got you covered for all your berry muffin needs.

So, buckle up and embark on a journey where gluten-free magic meets the irresistible charm that kids simply cannot resist! Happy baking, my gluten-free amigos. 

one muffin in foreground and three behind

Ingredients

ingredients
  • AP gluten-free flour - I like King Arthur gluten free 1:1 blend, Bob's Red Mill 1:1 Gluten Free Flour, or the Thomas Keller Cup4Cup blend.
  • Almond flour
  • Brown sugar
  • Baking powder
  • Baking soda
  • Salt
  • Unsalted butter, softened
  • Milk
  • Plain yogurt
  • Lemon zest
  • Lemon juice
  • Eggs
  • Vanilla extract
  • Blueberries - you can use fresh or frozen blueberries in this recipe!
  • White sugar, for sprinkling

See recipe card for exact quantities.

Equipment

  • Measuring cups
  • Measuring spoons
  • Mixing bowls
  • Spatula
  • handheld mixer
  • Standing mixer
  • Muffin tin
  • muffin liners

How to make these gluten free blueberry muffins

overhead muffin closeup with lemon

Prep: 

Preheat the oven to 375 ºF and position the rack in the middle. Line a 12-hole muffin tin with paper liners.

gluten free flour and butter with handheld mixer

Mixing the Dry Ingredients:

In a large bowl, combine the gluten-free flour, almond flour, brown sugar, baking powder, baking soda, xanthan gum, and salt. Add the softened butter to the dry ingredients and use a hand or standing mixer to blend them until the mixture resembles breadcrumbs.

lemon batter and butter
gluten free flour and butter
gluten free flour and butter with handheld mixer
whisking blueberry gluten free muffin batter

Creating the Batter:

Gradually add the milk, yogurt, eggs, lemon zest and lemon juice and vanilla extract to the butter-flour mixture. Whisk the ingredients together until a thick, smooth batter forms without any clumps of flour. 

blueberry gluten free muffin batter and tin
blueberry gluten free muffin batter

Filling the Muffins:

Add 1 tablespoon of gluten-free muffin batter to the bottom of each muffin liner to prevent the blueberries from sticking to the bottom.  Add ¾ of the blueberries to the main batter and stir, ensuring they are evenly distributed. Divide the remaining batter equally among the muffin cases, filling them to the brim for standard muffins or creating a small mound above the edge for jumbo muffins. Sprinkle the reserved blueberries and sugar on top. 

blueberry gluten free muffins in baking tin

Baking and Cooling:

Bake the muffins at 375 ºF for 20-22 minutes, or until they rise, turn golden brown, and a toothpick inserted comes out clean or with a few moist crumbs. Place the muffin tin on a wire rack to cool for 5 minutes, then transfer them to a wire cooling rack to cool completely.

one muffin in foreground and four behind

Storage

Our scrumptious blueberry muffins will stay fresh in a cozy, shady spot for a generous 3 days. Once days three and four roll around, pop them in the microwave for a quick 5-10 second nuke before devouring. Your tastebuds will thank you! 

one muffin in foreground and three behind

How do you keep the blueberries from sinking to the bottom?

Listen up, folks! Want to know how to keep those pesky blueberries from drowning in your muffin batter? No need to fret, I've got the solution. Simply scoop some batter sans blueberries into the bottom of each muffin cup, then mix in those blue beauties. Fill up the cups with more batter, then press some extra blueberries on top like little muffin crowns. Boom! Your gluten-free muffins will be the envy of all, with no fallen fruits in sight. 

How can I make this recipe vegan?

Want to crunch out the BEST vegan AND gluten free blueberry muffins? Look no further than this classic recipe. Don't worry, it's as simple as substituting a few ingredients: almond milk instead of regular, coconut oil instead of butter, and vegan yogurt. The result? Voila, you've got yourself some damn delicious gluten-free, vegan blueberry muffins. You can thank me later, muffin enthusiasts! 

Top Tips

Don't skimp on flavor - gluten-free doesn't have to mean taste-free. Instead, pile on the berries and experiment with adding natural sweeteners and spices like cinnamon or nutmeg for that extra oomph.
Don't be afraid to mix up your flours - go for a combo like almond flour, oat flour, and buckwheat flour for a texture that will blow your taste buds away.
Don't forget to grease your tin or use muffin liners - I mean, have you ever tried to pry a gluten-free muffin out of a stubborn tray? Believe me, it ain't easy. 
Keeping it cool - If you want your muffins to soar to new heights and flaunt a beautifully rounded top, keep those ingredients chilled and ready for action.
Avoid overmixing - Don't get too hasty with the mixing and risk serving up some rock-hard muffins.
Don't go all the way - When it comes to filling those little cups of deliciousness, strive for a two-thirds full status and trust the specified bake time to get you to muffin perfection. Easy peasy, muffin squeezy!
Sprinkle muffins with white sugar right before baking to give them a crunchy, glossy topping.

gluten free blueberry muffin cut in half and more around

Recipe

Tried and loved this recipe? Please leave a 5-star review below! Your reviews mean a lot to me, so if you've got any questions, please let me know in a comment.

gluten free blueberry muffin cut in half and more around

Gluten free lemon blueberry muffins

Ksenia Prints
These gluten free blueberry muffins recipe have a touch of lemon and are loved by adults and kids. The only blueberry muffin recipe you need!
4.98 from 47 votes
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Prep Time 10 minutes mins
Cook Time 22 minutes mins
Total Time 32 minutes mins
Course Dessert
Cuisine gluten-free, North American
Servings 12 muffins
Calories 282 kcal

Equipment

  • Measuring cups
  • Measuring spoons
  • Mixing bowls
  • Spatula
  • handheld mixer
  • Standing mixer
  • Muffin tin
  • muffin liners

Ingredients
  

  • 2 ⅓ cups gluten-free flour (280 g)
  • 13 tablespoon  almond flour (80 g, ¾ cup + 1 tbsp)
  • ¾ cup brown sugar (150 g)
  • 2 teaspoon baking powder
  • 1 teaspoon baking soda
  • ½ teaspoon salt
  • 1 stick + 1 tablespoon unsalted butter, softened (130 g)
  • ½ cup + 1 ½ tablespoon milk  (140 mL)
  • ½ cup + 1 ½ tablespoon plain yogurt  (140 g)
  • 2 eggs
  • 1 teaspoon vanilla extract
  • 2 tablespoon lemon juice
  • Lemon zest from ½ lemon
  • ¾ cup blueberries (fresh or frozen berries) (180 g)

Instructions
 

  • Preheat the oven to 375 ºF and position the rack in the middle of the oven.
  • Line a 12-hole muffin tin with paper liners.
  • In a large bowl, combine gluten-free flour, almond flour, brown sugar, baking powder, baking soda, xanthan gum, and salt.
  • Add butter to the dry ingredients and mix with a hand or standing mixer until the mixture resembles breadcrumbs.
  • Gradually add the milk, yogurt, eggs, vanilla extract, lemon zest and lemon juice to the butter-flour mixture and whisk until a thick, smooth batter forms without flour clumping.
  • Add 1 tablespoon of the gluten-free muffin batter to the bottom of each muffin liner. This will help prevent the berries from sinking all the way to the bottom.
  • Stir in the rest of the blueberries into the batter, reserving some for sprinkling on top, until evenly distributed.
  • Divide the rest of the batter equally into the muffin cases, filling them to the brim for standard muffins or creating a small mound above the edge for jumbo muffins. Sprinkle with reserved blueberries and sugar - this will create a beautiful shiny topping.
  • Bake at 375 ºF for 20-25 minutes until the muffins rise, turn golden brown, and a toothpick comes out clean or with a few moist crumbs (muffins made with frozen berries will take longer to bake - 22-25 minutes).
  • Let the muffins cool in the tin for 5 minutes, then transfer to a wire rack to cool completely.

Nutrition

Calories: 282kcalCarbohydrates: 35gProtein: 6gFat: 15gSaturated Fat: 7gPolyunsaturated Fat: 1gMonounsaturated Fat: 3gTrans Fat: 0.4gCholesterol: 54mgSodium: 284mgPotassium: 77mgFiber: 3gSugar: 17gVitamin A: 347IUVitamin C: 2mgCalcium: 118mgIron: 1mg
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Measuring spoons
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About Ksenia

Welcome to At The Immigrant's Table! I blend my immigrant roots with modern diets, crafting recipes that take you on a global kitchen adventure. As a food blogger and photographer, I'm dedicated to making international cuisine both healthy and accessible. Let's embark on a culinary journey that bridges cultures and introduces a world of flavors right into your home. Read more...

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    Comments

      4.98 from 47 votes (38 ratings without comment)

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    1. Betsy W says

      May 19, 2023 at 11:22 pm

      5 stars
      Blueberry and lemon are such a great combination! These look really good.

      Reply
      • kseniaprints says

        June 12, 2023 at 9:05 am

        They're my kids' faves!

    2. Sue says

      May 20, 2023 at 6:54 pm

      5 stars
      Blueberry muffins are my favorite! I have a couple friends who are gluten free so now I can make blueberry muffins for all to enjoy!

      Reply
      • kseniaprints says

        June 12, 2023 at 9:05 am

        They're going to love these muffins, I'm sure.

    3. Chichi says

      May 21, 2023 at 3:13 am

      5 stars
      These muffins are delicious. We made them got breakfast and my kids asked for seconds.

      Reply
      • kseniaprints says

        June 12, 2023 at 9:05 am

        My kids eat half the tray in one sitting!!

    4. Rose says

      May 22, 2023 at 12:59 am

      5 stars
      These blueberry muffins were the perfect addition to our mother's day brunch party!

      Reply
      • kseniaprints says

        June 12, 2023 at 9:06 am

        There's gotta be something for everyone at the Mother's Day table!! So glad these satisfied your GF eaters

    5. Jennifer says

      May 22, 2023 at 7:42 am

      5 stars
      There's so much incredible flavor in these muffins and they came out perfectly - hard to believe they're gluten-free because they taste so good. Great recipe!

      Reply
      • kseniaprints says

        June 12, 2023 at 9:06 am

        Thanks so much! I'm thrilled you liked them.

    6. Jenn says

      May 29, 2023 at 10:11 am

      5 stars
      Love these muffins! They're so light and had just the right amount of blueberries in them! Frozen some to eat later.

      Reply
      • kseniaprints says

        June 12, 2023 at 9:06 am

        Always gotta have some freezer muffins, my friend.

    7. Erica says

      June 12, 2023 at 9:01 am

      5 stars
      The bit of lemon in these is really wonderful - it makes the blueberry flavor pop! The best part is that no one ever knows when I use GF flour anymore, so this is definitely a win.

      Reply
      • kseniaprints says

        June 12, 2023 at 9:07 am

        I couldn't agree more - I always use lemon with blueberries and it's beautiful. So glad you liked them!

    8. Holly Johnson says

      July 26, 2024 at 1:19 pm

      You mention Zanthan gum in #3 direction but it is not listed up in the ingredients list.

      Reply
      • kseniaprints says

        July 26, 2024 at 1:43 pm

        Sorry if that's not clear, you only need to add xanthan gum if your flour mix doesn't have it. I recommend getting one that does!

    9. Heather Harty says

      March 24, 2026 at 5:25 pm

      4 stars
      Hello! Just making them now. They look so yummy. Couple of corrections: Your ingredient list doesn’t say Xanthan Gum but in the directions you mention mixing it in with baking soda, baking powder etc. Then in your “for the filling” you mention putting flour on the bottom of the cups so the chocolate chips don’t melt to the bottom, but the recipe list doesn’t call for chocolate chips anywhere else. I think I’m going to make them without the chocolate chips and xanthan gum but it does make it a little difficult to know which directions and info I’m supposed to follow. Thank you 🙂

      Reply
      • kseniaprints says

        March 25, 2026 at 11:12 pm

        You're 100% right! So the xanthan gum is due to the fact not all flour mixes have it. If yours does, you don't need to add it. I am going to clarify it.
        The chocolate chip is my mind wandering.... Fixing!

    10. lorene S says

      April 29, 2026 at 1:17 am

      5 stars
      I made half the recipe and made mini-muffins. I used frozen blueberries. It was easy to make and the flavour was delicious. My husband loved them.

      Reply
    A woman cutting a pumpkin in a kitchen while preparing healthy international recipes.

    Privet, I am Ksenia Prints! I help adventurous home cooks explore the world through healthy international recipes.

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